FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002466082

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002466082
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25404219
Sequences flagged as poor quality0
Sequence length50
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGCT508690.2002383934731471No Hit
GCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCCCCCGG430150.16932226887195392No Hit
GATAACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCCATTCG411910.1621423591097211No Hit
GGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTA373830.14715272293944562No Hit
GGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCTTTGCAACCATACT358860.1412600009470868No Hit
AACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAAT349970.13776058220880555No Hit
GGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAATGGAT344250.13550898770003517No Hit
GGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTA342130.13467448064433707No Hit
GTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATTCCCAT337340.1327889670609437No Hit
TGATCGTCTTCGAACCTCCGACTTTCGTTCTTGATTAATGAAAACATTCT324750.1278330973292271No Hit
AGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGA324260.1276402159814478No Hit
AGAGTCACCAAAGCCGCCGGCGCCCGCCCCCCGGCCGGGGCCGGAGAGGG294620.11597286261781951No Hit
ATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGC287270.11307964240113029No Hit
AAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGA270310.10640358595554542No Hit
AATCATGGCCTCAGTTCCGAAAACCAACAAAATAGAACCGCGGTCCTATT262600.10336865699354898No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)