FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002466083

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002466083
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25404219
Sequences flagged as poor quality0
Sequence length50
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGA411970.162165977233939No Hit
GCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGCT380150.1496404986903947No Hit
GGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGA366370.14421620282835698No Hit
GTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATTCCCAT357590.14076008398447518No Hit
GGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTA343920.13537908801683687No Hit
GATAACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCCATTCG338960.1334266564148262No Hit
ATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGC329410.1296674383101484No Hit
GTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGTCGCTC322770.12705369923003734No Hit
AAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGA322250.12684900882014913No Hit
GCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCCCCCGG312980.12320000862848805No Hit
AACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAAT305970.12044062444903346No Hit
TGATCGTCTTCGAACCTCCGACTTTCGTTCTTGATTAATGAAAACATTCT286020.11258759814659132No Hit
AGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTT285930.11255217096026451No Hit
GGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAATGGAT280390.11037143082414774No Hit
ACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGATTAAT276290.10875752566925989No Hit
AGAGTCACCAAAGCCGCCGGCGCCCGCCCCCCGGCCGGGGCCGGAGAGGG274690.10812770902345001No Hit
TGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGG267920.10546279734086689No Hit
TGGTTGCAAAGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGA263750.10382133770772484No Hit
TGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGATAACGA262350.10327024814264119No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)