FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002466088

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002466088
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20702354
Sequences flagged as poor quality0
Sequence length50
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGCT904770.4370372567293555No Hit
GGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTA760750.36747028864447007No Hit
AGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGA681460.32917029628611316No Hit
TGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGG644050.3110998874813946No Hit
AACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAAT642660.31042846625074616No Hit
GGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGTCCCCC636640.3075205843741248No Hit
GTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATTCCCAT567620.2741813805328612No Hit
ATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGC564140.2725004122719571No Hit
GGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGA530780.2563863027363941No Hit
TGCTCAATCTCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGG525020.253604010442484No Hit
TGATCGTCTTCGAACCTCCGACTTTCGTTCTTGATTAATGAAAACATTCT499200.24113199880554645No Hit
AAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGA494750.23898248479375822No Hit
GCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCCCCCGG485470.23449990276468075No Hit
AGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTT481150.23241318354424814No Hit
GGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTA470630.22733163581300947No Hit
GCACCACCACCCACGGAATCGAGAAAGAGCTATCAATCTGTCAATCCTGT436870.21102431153481385No Hit
ACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGATTAAT421200.20345512399217985No Hit
GGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCTTTGCAACCATACT418460.20213160300514618No Hit
ACTCCCCCCGGAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCGGG408820.19747512770769932No Hit
CAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAA383520.18525429523618425No Hit
GGGCATCACAGACCTGTTATTGCTCAATCTCGGGTGGCTGAACGCCACTT362950.17531822709630024No Hit
TGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGATAACGA359550.17367590178392273No Hit
ACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATG346190.16722252937999224No Hit
GGACATCTAAGGGCATCACAGACCTGTTATTGCTCAATCTCGGGTGGCTG345520.16689889468608254No Hit
TGGTTGCAAAGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGA344080.16620332161260504No Hit
GATAACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCCATTCG342710.1655415611190882No Hit
GGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAATGGAT342680.16552707001339076No Hit
GACCTGTTATTGCTCAATCTCGGGTGGCTGAACGCCACTTGTCCCTCTAA337990.16326162715602294No Hit
AAGGGCATCACAGACCTGTTATTGCTCAATCTCGGGTGGCTGAACGCCAC334030.16134880120395972No Hit
GACAGATTGATAGCTCTTTCTCGATTCCGTGGGTGGTGGTGCATGGCCGT326080.15750865819413581No Hit
GGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCG315170.15223872608883027No Hit
ACGCCGCCGCATCGCCGGTCGGCATCGTTTATGGTCGGAACTACGACGGT308390.14896373620120687No Hit
CCACGTGTCCCGCCCTACTCATCGAGCTCACAGCATGTGCATTTTTGTGT293150.14160225450690292No Hit
AAACGATGCCGACCGGCGATGCGGCGGCGTTATTCCCATGACCCGCCGGG292190.14113853912458457No Hit
ATCCCCATCACGAATGGGGTTCAACGGGTTACCCGCGCCTGCCGGCGTAG291080.14060236821377897No Hit
GTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGTCGCTC290590.14036568015405398No Hit
CAACGGGTTACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAG290240.14019661725425042No Hit
AGAGTCACCAAAGCCGCCGGCGCCCGCCCCCCGGCCGGGGCCGGAGAGGG288980.13958799081495754No Hit
GAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTT282070.13625020613597855No Hit
CCACCACCCACGGAATCGAGAAAGAGCTATCAATCTGTCAATCCTGTCCG278880.13470931856348317No Hit
GCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGATAA270460.1306421482310659No Hit
ATTCCCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTC264300.12766664119452312No Hit
AATCATGGCCTCAGTTCCGAAAACCAACAAAATAGAACCGCGGTCCTATT259300.125251456911615No Hit
ATTCCATTATTCCTAGCTGCGGTATCCAGGCGGCTCGGGCCTGCTTTGAA257000.12414047214147725No Hit
ATATACGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGC254510.122937710368589No Hit
ATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAG252580.12200544923538646No Hit
TGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAA251110.12129538505621149No Hit
CGAGCGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCC250150.12083166967389311No Hit
ATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGG249140.12034380244874568No Hit
GGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT248210.11989457817212477No Hit
GGGTGACAGCCCCGTACACAAAAATGCACATGCTGTGAGCTCGATGAGTA244270.11799141295719318No Hit
GCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGA241170.11649399870179014No Hit
ACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGC239900.11588054189393149No Hit
GTATTGTTATTTTTCGTCACTACCTCCCCGGGTCGGGAGTGGGTAATTTG239740.11580325599687842No Hit
TGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGCCGGTT237180.11456668164402947No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA233130.11261038237487389No Hit
GTTGCAAAGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGT232720.11241233726367542No Hit
TGGTCGGAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTCGT228810.11052366315444127No Hit
GGGACGGGCGGTGGCTCGCCTCGCGGCGGACCGCCCGCCCGCTCCCAAGA222870.10765442422634643No Hit
GGACTCTTTCGAGGCCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTA215730.10420554107035364No Hit
ATGGAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCAT215570.10412825517330057No Hit
AGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACA214830.10377080789943018No Hit
AACGCAGAGTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTG212230.10251491207231797No Hit
GTTATTGCTCAATCTCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGT207520.10023980847781852No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)