FastQCFastQC Report
Sat 3 Sep 2022
EGAF00002466604

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002466604
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences256405
Sequences flagged as poor quality0
Sequence length289
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATATGGGTGTACAGCCA167896.5478442308067315No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATAGGGCTGGATGATTA132045.1496655681441466No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGGCTTCACAGTGA124794.866909771650319No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGCTAAAACCTTCA103454.034632709970555No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATAGGACTTGACTCTCA100993.938690743160235No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTGGGTTTCACAGATA94923.7019558900957468No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTGGGGAGAATATGAA94413.682065482342388No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGGTTGCACTTGGA90563.531912404204286No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGGTATGACCGAGA83173.2436964957781638No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGGTTTAACAGAGA74412.9020494920145863No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTGGGCTTCACCACCA72052.8100076051559055No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATGGGGTTTGACCATTA71062.7713968136346794No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGGCCGGATGCTGA68032.6532243911000175No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATACGGATGAACAATAA63182.4640705134455256No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTGAGTTCCACTTTTA63142.46251048146487No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGGGATGACTTGGA56862.2175854605019403No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGGACTGACCAGAA55282.155964197266044No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGCTTTAACAAATA54712.1337337415417013No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGCTCTTACAGTTA46641.8189972894444337No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATCAGGTAAAACAGTCA46011.7944267857491079No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGGTTTTACATTGA45171.7616661141553402No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATCAGGATTCACTGTGA44801.7472358183342758No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGGATGGACAGTCA44181.7230553226341139No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGGAATGACCGTCA44061.718375226692147No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGGAAAGACTTGTA37751.4722801817437257No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGGTTTAACTAGCA37281.4539498059710225No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTCGGATTTACTGCCA33091.290536455997348No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTAAGATCCACCTTTA32061.2503656324954662No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATCTGGAGAGACTAGAA31091.2125348569645678No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATAGGGCAGCACGGACA28301.1037226263138393No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTGGGTATGATGGTGA27751.082272186579825No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATAGGGAATAACGGTGA26071.0167508433922894No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATCGAGCGTGACCTGAA23730.9254889725239367No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGGTTTTACTGTCA23570.9192488446013144No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATCAGGCCAGACAGTCA22820.8899982449640218No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGGCTGGACAGCAA22030.8591876133460735No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGCAATCACAGAAA19350.7546654706421482No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATCAGGCCTGACCAGCA19080.7441352547727228No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGGGTTGATAGTCA15570.6072424484701936No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGGATTCACGGTTA15450.6025623525282268No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATGTGGTAAAACAATCA13410.523000721514791No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATATGGGTTTACTGTCA11490.4481191864433221No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATCCTGCCAGAATATGG11110.4332988826270938No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATGGGGTGTGACCAACA9170.3576373315652971No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATCGAAGGCAGTCCCAG9140.3564673075798054No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATCCGGAATTCCGTCCG8590.3350168678457909No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATCTGGTTTTACTTGTA7310.28509584446481157No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATCTGGGGTGACCACAA6570.25623525282268284No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATCCGGAATTATGAGGT6010.2343948050935044No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATGGTTGTTGCCAGCTC5780.2254246212047347No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATCAAAAAAGATAAAGG5300.20670423743686744No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATAGCACAGAAGTACTC4650.1813537177512139No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGGTATGACCACCA4060.15834324603654373No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTCAAGTCCTGGGGCT3800.14820303816228234No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATATGGGTATACAGCCA2600.10140207874261423No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)