FastQCFastQC Report
Fri 2 Sep 2022
EGAF00002466614

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002466614
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences255381
Sequences flagged as poor quality0
Sequence length289
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCCAGCACGGTCAGCCTG4680418.327126920170254No Hit
CGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCTGTGACCGTGAGCCTG3176512.438278493701567No Hit
CGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTACAACTGTGAGTCTG2786410.910756869148448No Hit
CGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCTAGCACGGTGAGCCGT234449.180009476037764No Hit
CGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCGAGCACTGTCAGCCGG225808.841691433583549No Hit
CGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTACAACGGTTAACCTG214448.396865859245597No Hit
CGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCCAGTACGGTCAGCCTA154746.059182163120984No Hit
CGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTAGGATGGAGAGTCGA127204.980793402798172No Hit
CGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTACAACAGTGAGCCAA90293.535501858008231No Hit
CGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCGAGCACCAGGAGCCGC57322.244489605726346No Hit
CGACCTCGGAGCAGAACCCAACCTCCGAGCAGTACATGCTAAGACTTCAC48051.8815025393431777No Hit
CGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCTCCAGGCACTGTCCTC40381.581166962303382No Hit
CGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTGGTCAATATCTGATG29551.1570946938104243No Hit
CGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCCAGCACTGAGAGCCGG27591.0803466193647921No Hit
CGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCCAAGACAGAGAGCTGG20530.8038969226371577No Hit
CGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTCCAGGCACTGTCCTC12860.5035613455973624No Hit
CGACCTCGGGTGGGAACACGTTTTTTCAGGTCCTCCAGTACGGTCAGCCT7140.27958227119480306No Hit
CGACCTCGGGTGGGAGCACGTTTTTCAGGTCCTCTAGCACGGTGAGCCGT5470.21418977919265722No Hit
CGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCTCTGACACAGACACAG4100.1605444414423939No Hit
CGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCTAGCACGGTGAGCCAT3900.15271300527447226No Hit
CGACCTCGGGTGGGAACACGTTTTTCAGGTCCGAGCACTGTCAGCCGGGT3660.14331528187296627No Hit
CGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCTCTGCCCATCCCGCCC2680.10494124465015016No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)