FastQCFastQC Report
Sat 3 Sep 2022
EGAF00002466632

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002466632
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences397485
Sequences flagged as poor quality0
Sequence length289
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCTGTGACCGTGAGCCTG5685814.30443916122621No Hit
CGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCTAGCACGGTGAGCCGT5280613.285029623759387No Hit
CGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCGAGCACTGTCAGCCGG4438511.16645911166459No Hit
CGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTACAACTGTGAGTCTG4371210.997144546335083No Hit
CGACCTCGGAGCAGAACCCAACCTCCGAGCAGTACATGCTAAGACTTCAC4021410.11711133753475No Hit
CGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTAGGATGGAGAGTCGA310367.8080933871718425No Hit
CGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTACAACGGTTAACCTG271816.838245468382455No Hit
CGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCGAGCACCAGGAGCCGC179574.517654754267457No Hit
CGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCCAGTACGGTCAGCCTA113492.8552020830974754No Hit
CGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCCAGCACGGTCAGCCTG113132.8461451375523605No Hit
CGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCTCCAGGCACTGTCCTC68331.7190585808269494No Hit
CGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCCAGCACTGAGAGCCGG68071.712517453488811No Hit
CGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTCCAGGCACTGTCCTC58721.477288451136521No Hit
CGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCCAAGACAGAGAGCTGG40941.0299759739361234No Hit
CGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTGTCACAGTGAGCCTG31200.7849352805766254No Hit
CGACCTCGGGGCAGAACCCAACCTCCGAGCAGTACATGCTAAGACTTCAC17340.43624287708970155No Hit
CGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTGGTCAATATCTGATG16140.4060530586059851No Hit
CGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTACAACAGTGAGCCAA12320.309948803099488No Hit
CGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCTGGAAAGGGAAGAGGT9450.23774482055926638No Hit
CGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTGGAAAGGGAAGAGGG5930.14918801967369838No Hit
CGACCTCGGGTGGGAACACGTTTTTCGGTCCTCCAGCACTGAGAGCCGGG5930.14918801967369838No Hit
CGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCTTCCTCTGGGAGCTGC5720.14390480143904802No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)