FastQCFastQC Report
Sun 4 Sep 2022
EGAF00002466658

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002466658
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences903517
Sequences flagged as poor quality0
Sequence length289
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATCAGGCCTGACCAGCA11831213.094606963676389No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGGACTGACCAGAA11006112.181397804357859No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATCTGGTCTAACACTCA9858310.911028790825187No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATAGGGCAGCACGGACA694407.685522242525597No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGCTCTTACAGTTA572266.33369377665279No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATAGGGAATAACGGTGA489535.418049688052355No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATCAGGATTCACTGTGA398604.411649144399054No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATGGGGTTTGACCATTA338433.7456959857977217No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTGGGTTTCACAGATA282593.1276666626084513No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGGAATGACCGTCA275123.044989745627365No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGGGATGACTTGGA200962.224197220417546No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGCTAAAACCTTCA168771.867922795033187No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGGTTTTACTGTCA166501.8427987519880644No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATAGGGCTGGATGATTA139881.5481723088774202No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGGTTTAACAGAGA134211.4854175405664753No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATCTGGTTTTACTTGTA125991.3944397283061636No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGCAATCACAGAAA125211.385806797215769No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATCAGGTAAAACAGTCA108501.2008628503946246No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATGTGGTAAAACAATCA80920.8956112613265717No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGGAAAGACTTGTA78500.868827039225604No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTGAGTTCCACTTTTA74770.8275439200369223No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGGTTGCACTTGGA73070.8087285574040112No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATCTGGCTTTATAATTA65340.7231739967261269No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGGTTTTACATTGA61090.676135590143849No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGGCTGGACAGCAA58200.6441494736679No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGGTTTAACTAGCA57740.6390582578966417No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATACGGATGAACAATAA53500.5921305299180868No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGGCTTCACAGTGA44670.4944013228306717No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTGGGCTTCACCACCA40020.44293577209947355No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTCAAGTCCTGGGGCT37940.41991462252508804No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATCAGGCCAGACAGTCA32730.36225106998540146No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTGGGTATGATGGTGA22810.25245789509217864No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATAGCACAGAAGTACTC21880.24216478494593902No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGCTTTAACAAATA20430.22611638740610301No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATATGGGTTTACTGTCA20260.22423485114281194No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATCCAGGCAGTTGTGTC19460.21538056284497137No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATCGAGCGTGACCTGAA18120.20054962994608844No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATATACTTGGCTGGACA13180.14587439970692306No Hit
CAGCTGGTACACGGCAGGGTCAGGATTCTGGATATTTGCTAAAACCTTCA13090.144878292273416No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTAAGATCCACCTTTA12140.13436382491973034No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATCAATTATAACGAAGA9490.10503399493313353No Hit
CAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATAGGACTTGACTCTCA9040.10005345776559821No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)