FastQCFastQC Report
Wed 27 Sep 2023
EGAF00002481316

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481316
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30871666
Sequences flagged as poor quality0
Sequence length101
%GC51

[WARN]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACC1309850.42428873129166406No Hit
GTCAACTTCAAGCTCCTAAGCCACTGCCTGCTGGTGACCCTGGCCGCCCA383570.12424661500289619No Hit
CCTCAGCCAAGCACATACACCAAATGTCTGAACCTGCGGTTCCTCTCGTA346720.11231010338088006No Hit
CTCGTACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAA331840.1074901497055585No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)