FastQCFastQC Report
Tue 5 Sep 2023
EGAF00002481319

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481319
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41739602
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCC550850.13197298814684433No Hit
GCAGAATCCAGATGCTCAAGGCCCTTCATAATATCCCCCAGTTTAGTAGT499250.11961062781576115No Hit
GGCAGAATCCAGATGCTCAAGGCCCTTCATAATATCCCCCAGTTTAGTAG487640.11682909674126744No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)