FastQCFastQC Report
Mon 4 Sep 2023
EGAF00002481547

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481547
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44771301
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG950670.21233915002827367No Hit
CTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGC575740.1285957716529167No Hit
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA467070.10432352635899503No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)