FastQCFastQC Report
Mon 3 Apr 2023
EGAF00002481566

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481566
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32458307
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGGGACC617140.19013314526848243No Hit
CTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCAT335880.10348044338849835No Hit
GGTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGGGAC335770.1034465537589499No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)