FastQCFastQC Report
Sat 13 May 2023
EGAF00002481571

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481571
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34271996
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT597360.17429974023106212No Hit
CTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGC459620.13410949277655146No Hit
GTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCC373890.10909490068801361No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)