FastQCFastQC Report
Sat 11 May 2024
EGAF00002481597

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481597
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33062154
Total Bases2.4 Gbp
Sequences flagged as poor quality0
Sequence length35-76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGAAACGATCTCGTAT9147212.766670919263155TruSeq Adapter, Index 19 (97% over 40bp)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN618040.18693276911117165No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG427250.12922630509796793No Hit

[OK]Adapter Content

Adapter graph