FastQCFastQC Report
Thu 9 May 2024
EGAF00002481599

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481599
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38175930
Total Bases2.8 Gbp
Sequences flagged as poor quality0
Sequence length35-76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN2500570.6550122027151664No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTTTCGGAATCTCGTAT1177440.30842470635292973TruSeq Adapter, Index 21 (97% over 40bp)

[OK]Adapter Content

Adapter graph