FastQCFastQC Report
Sat 11 May 2024
EGAF00002481602

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481602
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31390808
Total Bases2.3 Gbp
Sequences flagged as poor quality0
Sequence length35-76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN4345391.3842874003115817No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGC623350.19857723955369355TruSeq Adapter, Index 2 (100% over 50bp)
CTCGGCTTTGACAGAGTGCAAGACGATGACTTGCAAAATGTCGCAGCTGG355680.11330705472761325No Hit

[OK]Adapter Content

Adapter graph