FastQCFastQC Report
Wed 14 Sep 2022
EGAF00002481602

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481602
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31390808
Sequences flagged as poor quality0
Sequence length35-76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN4345391.3842874003115817No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGC622060.198166291227674TruSeq Adapter, Index 2 (100% over 50bp)
CTCGGCTTTGACAGAGTGCAAGACGATGACTTGCAAAATGTCGCAGCTGG353860.11272726716687255No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)