FastQCFastQC Report
Sat 11 May 2024
EGAF00002481603

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481603
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26148109
Total Bases1.9 Gbp
Sequences flagged as poor quality0
Sequence length35-76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCATCTCGTATGC3926681.5017070641704913TruSeq Adapter, Index 3 (100% over 50bp)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1464380.5600328497942241No Hit
CTCGGCTTTGACAGAGTGCAAGACGATGACTTGCAAAATGTCGCAGCTGG343850.1315009050941313No Hit

[OK]Adapter Content

Adapter graph