FastQCFastQC Report
Wed 8 May 2024
EGAF00002481717

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481717
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67469278
Total Bases539.7 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATACGCC2736121540.553590924746516No Hit
AGCCAATT1979209729.334976728222884No Hit
CTAGGTGA1911358228.329311601644825RNA PCR Primer, Index 38 (100% over 8bp)
TCGTTCAG3122020.4627320897075555No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)