FastQCFastQC Report
Wed 8 May 2024
EGAF00002481724

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481724
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67855393
Total Bases542.8 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTCCA1811018026.6893745645243No Hit
CGCTATGT1708968925.18545430869437No Hit
AAACCGAG1659518324.456689831565782No Hit
TTGAGATC1505677022.189496419245554No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)