FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002481729

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481729
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48850841
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGACGCG1406796028.79778466864061No Hit
GGTCGTAC1259528625.783150795704827No Hit
TCCTTCTT1184611924.2495702376956No Hit
AAAGAAGA983079420.124103902325857No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)