FastQCFastQC Report
Fri 10 May 2024
EGAF00002481730

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481730
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49094568
Total Bases392.7 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGACGCG1412649128.774040745200164No Hit
GGTCGTAC1261155825.68829610640428No Hit
TCCTTCTT1190648224.252137222187187No Hit
AAAGAAGA989222320.149322833434443No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)