FastQCFastQC Report
Wed 8 May 2024
EGAF00002481735

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481735
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52378716
Total Bases419 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCTGTC1754550133.497386610240696No Hit
GAAACCCT1698743532.431942394311456No Hit
AGCGAAAG1691661032.29672525764091No Hit
CCGTGTGA3309140.6317718823042551No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)