FastQCFastQC Report
Wed 8 May 2024
EGAF00002481736

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481736
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53028943
Total Bases424.2 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCTGTC1770012133.378227056119144No Hit
GAAACCCT1715128032.3432431983417No Hit
AGCGAAAG1705473532.16118224344015No Hit
CCGTGTGA3347340.6312288743903495No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)