FastQCFastQC Report
Wed 8 May 2024
EGAF00002481741

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481741
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47761674
Total Bases382 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGTACGC1388514929.071738565947246No Hit
GTTCCTCA1326252027.768122197726992ABI Solid3 Adapter A (100% over 8bp)
CCCAGGAT1263317526.450444345815853No Hit
TAAGTATG758299715.876740417431767No Hit
TAAGTATA478380.10015980595655001No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)