FastQCFastQC Report
Thu 9 May 2024
EGAF00002481742

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481742
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48535550
Total Bases388.2 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGTACGC1403159028.90992272674359No Hit
GTTCCTCA1343019427.670839209610275ABI Solid3 Adapter A (100% over 8bp)
CCCAGGAT1279878326.3699144235514No Hit
TAAGTATG767145215.805841285408325No Hit
TAAGTATA486400.10021520308310095No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)