FastQCFastQC Report
Fri 10 May 2024
EGAF00002481747

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481747
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49327941
Total Bases394.6 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGCGCGC1490966930.22560580827811No Hit
GGCGAGTA1261690525.577603168151697No Hit
ACTTCTAT1069991121.69137973952734No Hit
CAAATACG1054049521.368203874554588No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)