FastQCFastQC Report
Wed 8 May 2024
EGAF00002481748

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481748
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49598500
Total Bases396.7 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGCGCGC1501743230.27799631037229No Hit
GGCGAGTA1270558525.61687349415809No Hit
ACTTCTAT1080344921.781805901388147No Hit
CAAATACG1061656421.40501023216428No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)