FastQCFastQC Report
Wed 8 May 2024
EGAF00002481755

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481755
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences60090652
Total Bases480.7 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGCTCTC1829015830.437609497064532No Hit
TTCGCTGA1628470127.10022350897441No Hit
CATTAGCG1533756025.524036583926563No Hit
ACAAGAAT942756115.688897833892698No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)