FastQCFastQC Report
Wed 8 May 2024
EGAF00002481761

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481761
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences60296675
Total Bases482.3 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGGCTT1738368328.83025141933614No Hit
CCACTACA1446369623.987551552386595No Hit
ATGAAGAC1432193623.752447377902676No Hit
GATTCTGG1342928422.272014169935574No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)