FastQCFastQC Report
Wed 8 May 2024
EGAF00002481762

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481762
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59480352
Total Bases475.8 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGGCTT1702026528.614936576031024No Hit
CCACTACA1419596523.86664591359513No Hit
ATGAAGAC1406413923.64501642491961No Hit
GATTCTGG1315478922.116192251182373No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)