FastQCFastQC Report
Wed 8 May 2024
EGAF00002481768

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481768
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59839890
Total Bases478.7 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGCGAT1805290030.16867176727765No Hit
ACCCGACG1580710826.41567021597132No Hit
TGATATTC1364529222.80300314723172No Hit
GTGATCGA1135292518.972168899374648No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)