FastQCFastQC Report
Wed 8 May 2024
EGAF00002481773

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481773
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences78689012
Total Bases629.5 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAGCAC2243295928.5083754768709No Hit
TTAGCTCG2223669628.258959459295284No Hit
ACTTAGGA1682440621.38088352157732No Hit
GACCTATT1641436320.859790436814734No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)