FastQCFastQC Report
Wed 8 May 2024
EGAF00002481774

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481774
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences79335780
Total Bases634.6 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAGCAC2264791328.54690909952609No Hit
TTAGCTCG2232771928.14331566413036No Hit
ACTTAGGA1698814621.412969028602227No Hit
GACCTATT1651344120.814619834833664No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)