FastQCFastQC Report
Wed 8 May 2024
EGAF00002481779

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481779
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences73488196
Total Bases587.9 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCTCG2213334630.118232865588375No Hit
AATCTCTC2091620628.461994086778237No Hit
CGGAGGGA1658729522.5713732311513No Hit
TCAGAAAT1269536617.275381205438762No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)