FastQCFastQC Report
Wed 8 May 2024
EGAF00002481780

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481780
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences73203313
Total Bases585.6 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCTCG2202458730.08687188788846No Hit
AATCTCTC2084193728.471302931330445No Hit
CGGAGGGA1652473222.57374881380027No Hit
TCAGAAAT1264661617.276015909279955No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)