FastQCFastQC Report
Wed 8 May 2024
EGAF00002481789

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481789
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64724743
Total Bases517.7 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCGGGC2041279331.53785098845429No Hit
CACGCCTT1741581026.907499655888937No Hit
AGGATACA1374744421.239858766221754No Hit
GTATATAG1216700518.79807386797967No Hit
TCTCGTGC748250.11560493952057871No Hit
CACGCCTA653770.10100773980670731No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)