FastQCFastQC Report
Wed 8 May 2024
EGAF00002481796

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481796
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58130699
Total Bases465 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATCTCC1919591033.02198378863464No Hit
AACGTCAA1734178329.832400604713182No Hit
CTGCGATG1082069818.6144295288794No Hit
TGTAAGGT1026605317.660295122203845No Hit
GCATCTCA716420.12324297012151875No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)