FastQCFastQC Report
Wed 8 May 2024
EGAF00002481801

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481801
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63042251
Total Bases504.3 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACCGCTC2115546633.55759933128022No Hit
TCGATACT1623431625.751485301500416No Hit
AGATCTGG1425578422.613063102711862No Hit
GTTGAGAA1083250917.182934981176352No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)