FastQCFastQC Report
Wed 8 May 2024
EGAF00002481807

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481807
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65059110
Total Bases520.4 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCAGAA1954617830.043721778548772No Hit
CGAACCTG1680086625.8240022035346No Hit
ATCTTACC1635996425.14630771924178No Hit
TATGGTGT1152845817.71997495815728No Hit
ATCTTACA698600.10737927401712073No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)