FastQCFastQC Report
Wed 8 May 2024
EGAF00002481808

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481808
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64712047
Total Bases517.6 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCAGAA1946900330.085592872684124No Hit
CGAACCTG1678501525.938006566227152No Hit
ATCTTACC1629529225.18123402895909No Hit
TATGGTGT1150618717.780595010385007No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)