FastQCFastQC Report
Wed 8 May 2024
EGAF00002481813

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481813
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52641353
Total Bases421.1 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGGACGT1399311026.581972541625216No Hit
ATCCCACA1385420026.318092545987565No Hit
GGAATGTC1237917923.51607300063127No Hit
CCTTGTAG1187698422.562079663871863No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)