FastQCFastQC Report
Wed 8 May 2024
EGAF00002481819

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481819
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70879240
Total Bases567 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCAGTC1906149826.89292097375762No Hit
GCAGTTCT1796126725.340659691046348No Hit
TGCACAAA1692455023.878007156961615No Hit
CTTTGCGG1632203823.027952895657457No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)