FastQCFastQC Report
Wed 8 May 2024
EGAF00002481820

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481820
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences71520457
Total Bases572.1 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCAGTC1916026126.78990292246035No Hit
GCAGTTCT1812705725.345275688045447No Hit
TGCACAAA1707562823.875166233907034No Hit
CTTTGCGG1645280823.00433846500729No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)