FastQCFastQC Report
Wed 8 May 2024
EGAF00002481831

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481831
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70793313
Total Bases566.3 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGGCGTC2572291036.33522561657765No Hit
GGTTTACT1537617021.71980565452559No Hit
AACCGTAA1462438320.65785930939551No Hit
CTAAACGG1454901320.551394451620027No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)