FastQCFastQC Report
Wed 8 May 2024
EGAF00002481832

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481832
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences71487411
Total Bases571.8 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGGCGTC2594355236.29107787943251No Hit
GGTTTACT1550324021.6866715175907No Hit
AACCGTAA1475446320.639246538107248No Hit
CTAAACGG1467769620.531861197211352No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)