FastQCFastQC Report
Fri 10 May 2024
EGAF00002481838

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481838
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49613441
Total Bases396.9 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCATCA1434617128.91589599681264No Hit
TCCGGAAG1258605825.368242448654186No Hit
AGTTCGGC1128103222.73785444553221No Hit
GTAATCTT1089869521.96722255164684No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)