FastQCFastQC Report
Wed 8 May 2024
EGAF00002481844

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481844
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70351375
Total Bases562.8 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGATAGC1994024328.3437857469026No Hit
GGCTGTTG1893375426.91312572071264No Hit
TATGAGCT1643116023.355847700204865No Hit
ATACCCAA1429384620.317791940811393No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)