FastQCFastQC Report
Wed 8 May 2024
EGAF00002481845

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481845
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49280775
Total Bases394.2 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCTTAGC1462549329.677887573805407No Hit
ATAGGCCA1253727425.44049682660226No Hit
GAGACTAT1125886622.84636554518471No Hit
TCTCAGTG1055760921.423382647695778No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)