FastQCFastQC Report
Fri 10 May 2024
EGAF00002481846

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481846
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49698575
Total Bases397.5 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCTTAGC1465793829.493678641691435No Hit
ATAGGCCA1256867825.28981565366814No Hit
GAGACTAT1128876122.714456098590354No Hit
TCTCAGTG1057787921.284069010026947No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)