FastQCFastQC Report
Wed 8 May 2024
EGAF00002481851

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481851
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67532894
Total Bases540.2 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGCTCTC1996843329.568454448287085No Hit
TTCGCTGA1818231926.923648496390513No Hit
CATTAGCG1440679721.333006993599295No Hit
ACAAGAAT1330997919.70888290378908No Hit
GGTCTCTC1901090.2815057799833071No Hit
ACAATAAT1149560.17022223273890794No Hit
GGGATCTC1043590.154530620292979No Hit
GGGCGCTC846820.1253937081387331No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)