FastQCFastQC Report
Wed 8 May 2024
EGAF00002481857

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481857
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67487176
Total Bases539.8 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGACGCCC2477053236.70405767163824No Hit
CTGACTGA1617353923.965351580276526No Hit
ACCGTATG1278108718.938541746064466No Hit
GATTAGAT1265341118.74935617397889No Hit
TGACGCCA1024470.15180217349737674No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)